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rdocking / fusebench

A workbench for aggregation and interpretation of RNA-Seq gene fusions
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Write simple BEDPE validator #18

Closed rdocking closed 7 years ago

rdocking commented 7 years ago

As a user, I want to have a simple script that talks a supposedly-BEDPE-formatted file as input, and checks whether that file actually conforms to the BEDPE format.

All of our conventions for 'properly formatted' should be enforced by this tool.

hiraksarkar commented 7 years ago

I can take this one. The format should comply with http://bedtools.readthedocs.io/en/latest/content/general-usage.html#bedpe-format right?

hiraksarkar commented 7 years ago

working on this.

rdocking commented 7 years ago

Yep - that's the standard we're using - thanks!

hiraksarkar commented 7 years ago

45 merged