search

rdpstaff / Framebot

Dynamic programming based frame shift detection and correction tool with nearest neighbor classification.
GNU General Public License v3.0
7 stars 7 forks source link

cannot use protein as the reference #3

Open zoubinok opened 7 years ago

zoubinok commented 7 years ago

Hello. As I have a series of sequences to process, I try to use local FrameBot. Unfortunately, I cannot use protein as the reference, which can be sued on the web FrameBot. But the index works. So I use the dataset in the RDP pipeline. It has the same problem. So how can I deal with it? Thank you.

Error Message: java -jar /home/server/RDPTools/FrameBot.jar framebot -o amoaaob_test amoA_prot_ref.fasta /home/server/RDPTools/Xander_assembler/gene_resource/amoA_AOB/originaldata/nucl.fa Exception in thread "main" java.util.zip.ZipException: Not in GZIP format at java.util.zip.GZIPInputStream.readHeader(GZIPInputStream.java:164) at java.util.zip.GZIPInputStream.(GZIPInputStream.java:78) at java.util.zip.GZIPInputStream.(GZIPInputStream.java:90) at edu.msu.cme.rdp.framebot.index.FramebotIndex.readExternalIndex(FramebotIndex.java:186) at edu.msu.cme.rdp.framebot.cli.FramebotMain.main(FramebotMain.java:474) at edu.msu.cme.rdp.framebot.cli.Main.main(Main.java:50)