Hi guys, Im trying to perform leave one sequence out testing on the rdp classifier such that i can get all the classifications for all 13212 sequences in the RDP dataset. The output of the leave one sequence out testing only returns the misclassified sequences with their confidences without all levels. How do i get the leave one sequence out testing format to give me all the classifications at all levels with all confidences. So far i've tried to set the confidence like this but it doesnt seem to work :
Hi guys, Im trying to perform leave one sequence out testing on the rdp classifier such that i can get all the classifications for all 13212 sequences in the RDP dataset. The output of the leave one sequence out testing only returns the misclassified sequences with their confidences without all levels. How do i get the leave one sequence out testing format to give me all the classifications at all levels with all confidences. So far i've tried to set the confidence like this but it doesnt seem to work :
java -Xmx1g -jar /path/to/classifier.jar loot -q -allrank -c 0.0 samplefiles/Armatimonadetes.fasta -s samplefiles/new_trainset.fasta -t samplefiles/new_trainset_db_taxid.txt -l 400 -o Armatimonadetes_400_loso_test.txtCan you guys help out? Thanks