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LEfSe on changes #36

Closed aneviere closed 5 years ago

aneviere commented 5 years ago

Hi everyone,

I'm using your packages "yingtools2" for the LEfSe function. I would like to know if there a way to perform LEfSe on changes (log ratio) ? I explain my study : we've data for several groups at 2 time points and we want to find impacted taxa between groups using the change from baseline (log ratio). Is it feasible ? Is there a way to define classes to have an identical study ?

Another question is how you deal with negative or 0 values ? I run LEfSe with the same dataset and different value in there and I didn't obtain the same number of rows in the result table

Thanks in advance !

ihowson commented 5 years ago

Thanks for getting in touch!

This issue tracker is just for website issues. We're not able to provide technical support for individual packages. Sorry!