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reactome / ReactomeContentService4R

R Interface for Reactome data
Apache License 2.0
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Available ReferenceDatabase #20

Open chilampoon opened 4 years ago

chilampoon commented 4 years ago

Which non-Reactome databases can be used in /data/mapping/{resource}/{identifier}/pathways|reactions?

The databases in secondaryIdentifier slot, e.g. GO, can't be searched.

Full list: https://reactome.org/content/schema/objects/ReferenceDatabase

SolomonShorser-OICR commented 4 years ago

In theory, you can try with any of the ReferenceDatabase resources listed, but not all identifiers will have a mapping to all resources.

cookersjs commented 4 years ago

We'll want to explore this idea if graph db work is completed. For now, we'll keep the issue to remind ourselves but other than we can put a pin in it