reactome / analysis-service

A RESTful API to access pathway analysis tools
https://reactome.org/AnalysisService/
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Bump spring.version from 4.3.10.RELEASE to 5.2.8.RELEASE #14

Closed dependabot[bot] closed 4 years ago

dependabot[bot] commented 4 years ago

Bumps spring.version from 4.3.10.RELEASE to 5.2.8.RELEASE. Updates spring-core from 4.3.10.RELEASE to 5.2.8.RELEASE

Release notes

Sourced from spring-core's releases.

v5.2.8.RELEASE

:star: New Features

  • Defer creating logger in StandardWebSocketHandlerAdapter #25427
  • MutablePropertySources will not find or remove proxied sources #25369
  • Profiles should be comparable when created via Profiles.of() #25340
  • Avoid re-creating RSocketRequester instance per subscriber #25330
  • Hoist Class.getName() from String concatenation to dodge an issue related to profile pollution #25324
  • Improve Random seed in SocketUtils #25321
  • Support fragments in UriComponentsBuilder.fromHttpUrl() #25300
  • Support for custom cache registration in CaffeineCacheManager #25230
  • Don't get ContentCachingResponseWrapper in ShallowEtagHeaderFilter so that users can extend this wrapper #24976
  • Unnecessarily alarming stack trace logged during scheduler resolution #23268
  • Expose a setExceptionListener method in DefaultJmsListenerContainerFactory [SPR-17570] #22102

:beetle: Bug fixes

  • UriComponentsBuilder.cloneBuilder() cause sharing query parameters between builders #25423
  • SimpleJdbcCall does not find stored function with PostgreSQL driver 42.2.11 #25399
  • MappingJackson2HttpMessageConverter might be too specific in its Charset support #25322
  • ReactorNetty websocket issue for multiple clients with different protocols #25315
  • Mutating a ServerHttpRequest breaks the existing context path #25279
  • ServerHttpRequest.getSslInfo() always returns null for reactor-netty HTTP/2 requests #25278
  • NoRollbackFor rule causes TransactionAspectSupport to log unwarranted "exception overridden" error on WebSphere #25253
  • AbstractJackson2HttpMessageConverter - Check for encoding breaks JSON to POJO de-serialization experience #25247
  • The AbstractTemplateViewResolver class is not abstract #25240
  • WebClient: NPE and leak in case connection is reset by server. #25216
  • Oracle LOB segments holding TEMP space after executing SP using SimpleJdbcCall with SqlParameterSource #22972
  • IllegalReferenceCountException happens when the operation was canceled #22594
  • DefaultListableBeanFactory.getBean(Class) may throw NoSuchBeanDefinitionException when removeBeanDefinition is being called simultaneously to remove an unrelated bean #22263

:notebook_with_decorative_cover: Documentation

  • Clarify enforceInitMethod/enforceDestroyMethod default values in AbstractBeanDefinition #25402
  • Improve JavaDoc for ConfigurableApplicationContext.refresh() #25380
  • Fix interface and class names in examples in core-aop doc #25351
  • Wording changes #25314
  • Fix typo in Java example for handler class #25302
  • Improve Javadoc for @Value regarding supported expressions #25284
  • Fix syntax in validation examples #25251
  • Document exception handling limitations in TaskDecorator implementations (specifically for ThreadPoolTaskExecutor#submit) #25231

:hammer: Dependency upgrades

  • Upgrade to Reactor Dysprosium-SR10 #25376
  • Upgrade to nohttp 0.0.5 #25266

:heart: Contributors

We’d like to thank all the contributors who worked on our current release!

Commits
  • c23b1bd Release version 5.2.8.RELEASE
  • 1c83b3f Wording changes
  • 913eca9 ReactorNettyRequestUpgradeStrategy uses unique builder per request
  • 6c7f18e Upgrade to Jetty Reactive HttpClient 1.1.4
  • 64f4703 Defer creating logger in StandardWebSocketHandlerAdapter to instantiation time
  • eb032a5 Upgrade to Reactor Dysprosium-SR10
  • 65e6010 Copy queryParams MultiValueMap through addAll (for independent List entries)
  • f1345aa Defensively access existing beanDefinitionMap entries
  • 43e315f Unwrap SqlParameterValue for disposable value detection in cleanupParameters
  • 30bc5e0 Defensively catch NoSuchBeanDefinitionException on beanDefinitionNames traversal
  • Additional commits viewable in compare view


Updates spring-web from 4.3.10.RELEASE to 5.2.8.RELEASE

Release notes

Sourced from spring-web's releases.

v5.2.8.RELEASE

:star: New Features

  • Defer creating logger in StandardWebSocketHandlerAdapter #25427
  • MutablePropertySources will not find or remove proxied sources #25369
  • Profiles should be comparable when created via Profiles.of() #25340
  • Avoid re-creating RSocketRequester instance per subscriber #25330
  • Hoist Class.getName() from String concatenation to dodge an issue related to profile pollution #25324
  • Improve Random seed in SocketUtils #25321
  • Support fragments in UriComponentsBuilder.fromHttpUrl() #25300
  • Support for custom cache registration in CaffeineCacheManager #25230
  • Don't get ContentCachingResponseWrapper in ShallowEtagHeaderFilter so that users can extend this wrapper #24976
  • Unnecessarily alarming stack trace logged during scheduler resolution #23268
  • Expose a setExceptionListener method in DefaultJmsListenerContainerFactory [SPR-17570] #22102

:beetle: Bug fixes

  • UriComponentsBuilder.cloneBuilder() cause sharing query parameters between builders #25423
  • SimpleJdbcCall does not find stored function with PostgreSQL driver 42.2.11 #25399
  • MappingJackson2HttpMessageConverter might be too specific in its Charset support #25322
  • ReactorNetty websocket issue for multiple clients with different protocols #25315
  • Mutating a ServerHttpRequest breaks the existing context path #25279
  • ServerHttpRequest.getSslInfo() always returns null for reactor-netty HTTP/2 requests #25278
  • NoRollbackFor rule causes TransactionAspectSupport to log unwarranted "exception overridden" error on WebSphere #25253
  • AbstractJackson2HttpMessageConverter - Check for encoding breaks JSON to POJO de-serialization experience #25247
  • The AbstractTemplateViewResolver class is not abstract #25240
  • WebClient: NPE and leak in case connection is reset by server. #25216
  • Oracle LOB segments holding TEMP space after executing SP using SimpleJdbcCall with SqlParameterSource #22972
  • IllegalReferenceCountException happens when the operation was canceled #22594
  • DefaultListableBeanFactory.getBean(Class) may throw NoSuchBeanDefinitionException when removeBeanDefinition is being called simultaneously to remove an unrelated bean #22263

:notebook_with_decorative_cover: Documentation

  • Clarify enforceInitMethod/enforceDestroyMethod default values in AbstractBeanDefinition #25402
  • Improve JavaDoc for ConfigurableApplicationContext.refresh() #25380
  • Fix interface and class names in examples in core-aop doc #25351
  • Wording changes #25314
  • Fix typo in Java example for handler class #25302
  • Improve Javadoc for @Value regarding supported expressions #25284
  • Fix syntax in validation examples #25251
  • Document exception handling limitations in TaskDecorator implementations (specifically for ThreadPoolTaskExecutor#submit) #25231

:hammer: Dependency upgrades

  • Upgrade to Reactor Dysprosium-SR10 #25376
  • Upgrade to nohttp 0.0.5 #25266

:heart: Contributors

We’d like to thank all the contributors who worked on our current release!

Commits
  • c23b1bd Release version 5.2.8.RELEASE
  • 1c83b3f Wording changes
  • 913eca9 ReactorNettyRequestUpgradeStrategy uses unique builder per request
  • 6c7f18e Upgrade to Jetty Reactive HttpClient 1.1.4
  • 64f4703 Defer creating logger in StandardWebSocketHandlerAdapter to instantiation time
  • eb032a5 Upgrade to Reactor Dysprosium-SR10
  • 65e6010 Copy queryParams MultiValueMap through addAll (for independent List entries)
  • f1345aa Defensively access existing beanDefinitionMap entries
  • 43e315f Unwrap SqlParameterValue for disposable value detection in cleanupParameters
  • 30bc5e0 Defensively catch NoSuchBeanDefinitionException on beanDefinitionNames traversal
  • Additional commits viewable in compare view


Updates spring-webmvc from 4.3.10.RELEASE to 5.2.8.RELEASE

Release notes

Sourced from spring-webmvc's releases.

v5.2.8.RELEASE

:star: New Features

  • Defer creating logger in StandardWebSocketHandlerAdapter #25427
  • MutablePropertySources will not find or remove proxied sources #25369
  • Profiles should be comparable when created via Profiles.of() #25340
  • Avoid re-creating RSocketRequester instance per subscriber #25330
  • Hoist Class.getName() from String concatenation to dodge an issue related to profile pollution #25324
  • Improve Random seed in SocketUtils #25321
  • Support fragments in UriComponentsBuilder.fromHttpUrl() #25300
  • Support for custom cache registration in CaffeineCacheManager #25230
  • Don't get ContentCachingResponseWrapper in ShallowEtagHeaderFilter so that users can extend this wrapper #24976
  • Unnecessarily alarming stack trace logged during scheduler resolution #23268
  • Expose a setExceptionListener method in DefaultJmsListenerContainerFactory [SPR-17570] #22102

:beetle: Bug fixes

  • UriComponentsBuilder.cloneBuilder() cause sharing query parameters between builders #25423
  • SimpleJdbcCall does not find stored function with PostgreSQL driver 42.2.11 #25399
  • MappingJackson2HttpMessageConverter might be too specific in its Charset support #25322
  • ReactorNetty websocket issue for multiple clients with different protocols #25315
  • Mutating a ServerHttpRequest breaks the existing context path #25279
  • ServerHttpRequest.getSslInfo() always returns null for reactor-netty HTTP/2 requests #25278
  • NoRollbackFor rule causes TransactionAspectSupport to log unwarranted "exception overridden" error on WebSphere #25253
  • AbstractJackson2HttpMessageConverter - Check for encoding breaks JSON to POJO de-serialization experience #25247
  • The AbstractTemplateViewResolver class is not abstract #25240
  • WebClient: NPE and leak in case connection is reset by server. #25216
  • Oracle LOB segments holding TEMP space after executing SP using SimpleJdbcCall with SqlParameterSource #22972
  • IllegalReferenceCountException happens when the operation was canceled #22594
  • DefaultListableBeanFactory.getBean(Class) may throw NoSuchBeanDefinitionException when removeBeanDefinition is being called simultaneously to remove an unrelated bean #22263

:notebook_with_decorative_cover: Documentation

  • Clarify enforceInitMethod/enforceDestroyMethod default values in AbstractBeanDefinition #25402
  • Improve JavaDoc for ConfigurableApplicationContext.refresh() #25380
  • Fix interface and class names in examples in core-aop doc #25351
  • Wording changes #25314
  • Fix typo in Java example for handler class #25302
  • Improve Javadoc for @Value regarding supported expressions #25284
  • Fix syntax in validation examples #25251
  • Document exception handling limitations in TaskDecorator implementations (specifically for ThreadPoolTaskExecutor#submit) #25231

:hammer: Dependency upgrades

  • Upgrade to Reactor Dysprosium-SR10 #25376
  • Upgrade to nohttp 0.0.5 #25266

:heart: Contributors

We’d like to thank all the contributors who worked on our current release!

Commits
  • c23b1bd Release version 5.2.8.RELEASE
  • 1c83b3f Wording changes
  • 913eca9 ReactorNettyRequestUpgradeStrategy uses unique builder per request
  • 6c7f18e Upgrade to Jetty Reactive HttpClient 1.1.4
  • 64f4703 Defer creating logger in StandardWebSocketHandlerAdapter to instantiation time
  • eb032a5 Upgrade to Reactor Dysprosium-SR10
  • 65e6010 Copy queryParams MultiValueMap through addAll (for independent List entries)
  • f1345aa Defensively access existing beanDefinitionMap entries
  • 43e315f Unwrap SqlParameterValue for disposable value detection in cleanupParameters
  • 30bc5e0 Defensively catch NoSuchBeanDefinitionException on beanDefinitionNames traversal
  • Additional commits viewable in compare view


Updates spring-test from 4.3.10.RELEASE to 5.2.8.RELEASE

Release notes

Sourced from spring-test's releases.

v5.2.8.RELEASE

:star: New Features

  • Defer creating logger in StandardWebSocketHandlerAdapter #25427
  • MutablePropertySources will not find or remove proxied sources #25369
  • Profiles should be comparable when created via Profiles.of() #25340
  • Avoid re-creating RSocketRequester instance per subscriber #25330
  • Hoist Class.getName() from String concatenation to dodge an issue related to profile pollution #25324
  • Improve Random seed in SocketUtils #25321
  • Support fragments in UriComponentsBuilder.fromHttpUrl() #25300
  • Support for custom cache registration in CaffeineCacheManager #25230
  • Don't get ContentCachingResponseWrapper in ShallowEtagHeaderFilter so that users can extend this wrapper #24976
  • Unnecessarily alarming stack trace logged during scheduler resolution #23268
  • Expose a setExceptionListener method in DefaultJmsListenerContainerFactory [SPR-17570] #22102

:beetle: Bug fixes

  • UriComponentsBuilder.cloneBuilder() cause sharing query parameters between builders #25423
  • SimpleJdbcCall does not find stored function with PostgreSQL driver 42.2.11 #25399
  • MappingJackson2HttpMessageConverter might be too specific in its Charset support #25322
  • ReactorNetty websocket issue for multiple clients with different protocols #25315
  • Mutating a ServerHttpRequest breaks the existing context path #25279
  • ServerHttpRequest.getSslInfo() always returns null for reactor-netty HTTP/2 requests #25278
  • NoRollbackFor rule causes TransactionAspectSupport to log unwarranted "exception overridden" error on WebSphere #25253
  • AbstractJackson2HttpMessageConverter - Check for encoding breaks JSON to POJO de-serialization experience #25247
  • The AbstractTemplateViewResolver class is not abstract #25240
  • WebClient: NPE and leak in case connection is reset by server. #25216
  • Oracle LOB segments holding TEMP space after executing SP using SimpleJdbcCall with SqlParameterSource #22972
  • IllegalReferenceCountException happens when the operation was canceled #22594
  • DefaultListableBeanFactory.getBean(Class) may throw NoSuchBeanDefinitionException when removeBeanDefinition is being called simultaneously to remove an unrelated bean #22263

:notebook_with_decorative_cover: Documentation

  • Clarify enforceInitMethod/enforceDestroyMethod default values in AbstractBeanDefinition #25402
  • Improve JavaDoc for ConfigurableApplicationContext.refresh() #25380
  • Fix interface and class names in examples in core-aop doc #25351
  • Wording changes #25314
  • Fix typo in Java example for handler class #25302
  • Improve Javadoc for @Value regarding supported expressions #25284
  • Fix syntax in validation examples #25251
  • Document exception handling limitations in TaskDecorator implementations (specifically for ThreadPoolTaskExecutor#submit) #25231

:hammer: Dependency upgrades

  • Upgrade to Reactor Dysprosium-SR10 #25376
  • Upgrade to nohttp 0.0.5 #25266

:heart: Contributors

We’d like to thank all the contributors who worked on our current release!

Commits
  • c23b1bd Release version 5.2.8.RELEASE
  • 1c83b3f Wording changes
  • 913eca9 ReactorNettyRequestUpgradeStrategy uses unique builder per request
  • 6c7f18e Upgrade to Jetty Reactive HttpClient 1.1.4
  • 64f4703 Defer creating logger in StandardWebSocketHandlerAdapter to instantiation time
  • eb032a5 Upgrade to Reactor Dysprosium-SR10
  • 65e6010 Copy queryParams MultiValueMap through addAll (for independent List entries)
  • f1345aa Defensively access existing beanDefinitionMap entries
  • 43e315f Unwrap SqlParameterValue for disposable value detection in cleanupParameters
  • 30bc5e0 Defensively catch NoSuchBeanDefinitionException on beanDefinitionNames traversal
  • Additional commits viewable in compare view


Updates spring-context-support from 4.3.10.RELEASE to 5.2.8.RELEASE

Release notes

Sourced from spring-context-support's releases.

v5.2.8.RELEASE

:star: New Features

  • Defer creating logger in StandardWebSocketHandlerAdapter #25427
  • MutablePropertySources will not find or remove proxied sources #25369
  • Profiles should be comparable when created via Profiles.of() #25340
  • Avoid re-creating RSocketRequester instance per subscriber #25330
  • Hoist Class.getName() from String concatenation to dodge an issue related to profile pollution #25324
  • Improve Random seed in SocketUtils #25321
  • Support fragments in UriComponentsBuilder.fromHttpUrl() #25300
  • Support for custom cache registration in CaffeineCacheManager #25230
  • Don't get ContentCachingResponseWrapper in ShallowEtagHeaderFilter so that users can extend this wrapper #24976
  • Unnecessarily alarming stack trace logged during scheduler resolution #23268
  • Expose a setExceptionListener method in DefaultJmsListenerContainerFactory [SPR-17570] #22102

:beetle: Bug fixes

  • UriComponentsBuilder.cloneBuilder() cause sharing query parameters between builders #25423
  • SimpleJdbcCall does not find stored function with PostgreSQL driver 42.2.11 #25399
  • MappingJackson2HttpMessageConverter might be too specific in its Charset support #25322
  • ReactorNetty websocket issue for multiple clients with different protocols #25315
  • Mutating a ServerHttpRequest breaks the existing context path #25279
  • ServerHttpRequest.getSslInfo() always returns null for reactor-netty HTTP/2 requests #25278
  • NoRollbackFor rule causes TransactionAspectSupport to log unwarranted "exception overridden" error on WebSphere #25253
  • AbstractJackson2HttpMessageConverter - Check for encoding breaks JSON to POJO de-serialization experience #25247
  • The AbstractTemplateViewResolver class is not abstract #25240
  • WebClient: NPE and leak in case connection is reset by server. #25216
  • Oracle LOB segments holding TEMP space after executing SP using SimpleJdbcCall with SqlParameterSource #22972
  • IllegalReferenceCountException happens when the operation was canceled #22594
  • DefaultListableBeanFactory.getBean(Class) may throw NoSuchBeanDefinitionException when removeBeanDefinition is being called simultaneously to remove an unrelated bean #22263

:notebook_with_decorative_cover: Documentation

  • Clarify enforceInitMethod/enforceDestroyMethod default values in AbstractBeanDefinition #25402
  • Improve JavaDoc for ConfigurableApplicationContext.refresh() #25380
  • Fix interface and class names in examples in core-aop doc #25351
  • Wording changes #25314
  • Fix typo in Java example for handler class #25302
  • Improve Javadoc for @Value regarding supported expressions #25284
  • Fix syntax in validation examples #25251
  • Document exception handling limitations in TaskDecorator implementations (specifically for ThreadPoolTaskExecutor#submit) #25231

:hammer: Dependency upgrades

  • Upgrade to Reactor Dysprosium-SR10 #25376
  • Upgrade to nohttp 0.0.5 #25266

:heart: Contributors

We’d like to thank all the contributors who worked on our current release!

Commits
  • c23b1bd Release version 5.2.8.RELEASE
  • 1c83b3f Wording changes
  • 913eca9 ReactorNettyRequestUpgradeStrategy uses unique builder per request
  • 6c7f18e Upgrade to Jetty Reactive HttpClient 1.1.4
  • 64f4703 Defer creating logger in StandardWebSocketHandlerAdapter to instantiation time
  • eb032a5 Upgrade to Reactor Dysprosium-SR10
  • 65e6010 Copy queryParams MultiValueMap through addAll (for independent List entries)
  • f1345aa Defensively access existing beanDefinitionMap entries
  • 43e315f Unwrap SqlParameterValue for disposable value detection in cleanupParameters
  • 30bc5e0 Defensively catch NoSuchBeanDefinitionException on beanDefinitionNames traversal
  • Additional commits viewable in compare view


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dependabot[bot] commented 4 years ago

Superseded by #16.