search

reactome / container

:construction: Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". :construction:
9 stars 4 forks source link

Feature/documentation #42

Closed AyushyaChitransh closed 7 years ago

AyushyaChitransh commented 7 years ago

Modified README.md: Containing all the text for documentation.

Modified docker-compose.yml: wordpress-sites to use wordpress.env, mysql-database in develop branch already uses wordpress.env

Modified wordpress.env: Removed non-essential variables.

Added prereqs-ubuntu.sh: File which installs prerequisites.

Added documentation-images/all-services.png Added documentation-images/mysql-for-tomcat.png Added documentation-images/mysql-for-wordpress.png Added documentation-images/neo4j-db.png Added documentation-images/solr.png Added documentation-images/tomcat.png Added documentation-images/wordpress-sites.png

AyushyaChitransh commented 7 years ago

I have mentioned about most of the logs but one log from build_solr_index.sh is getting stored inside the java-application-builder directory.

We can use dirname to refer to parent directory and get all logs in one place. Or if the logs related to build_solr_index are meant to be stored there then we could add that information in README.

SolomonShorser-OICR commented 7 years ago

Don't worry about build_solr_index stuff - that is still a work-in-progress. I will fix that later when it is complete.

AyushyaChitransh commented 7 years ago

I tried few things but didn't reach any fruitful result. We can modify few files inside /opt/solr/server as described here.

I earlier tried with mounting /opt/solr/server but that removed other mounts. I will get back with this later today.

SolomonShorser-OICR commented 7 years ago

That was the link I found too. I'm going to have a look at some of our production servers to see how it's done there. It shouldn't be that hard...

Worst case scenario (If we can't get something working soon): I'll open an new issue and assign it to myself to work on later. I don't want this to delay your GSoC final submission.

AyushyaChitransh commented 7 years ago

Okay, till then I'll try and see if I can get it working. And by default, solr accepts connections from localhost only, and by default, no login screen is shown and localhost logs in directly.

SolomonShorser-OICR commented 7 years ago

Oh, Ok. I didn't realize that it would only accept local connections by default. Still, I'd like to get passwords working. I will also try something here.

AyushyaChitransh commented 7 years ago

I got it working, I'll push the changes related to solr in a new branch soon.

SolomonShorser-OICR commented 7 years ago

Ok, great to hear!