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reanahub / reana-client

REANA command-line client
http://reana-client.readthedocs.io/
MIT License
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cwl: nicer progress command #125

Closed tiborsimko closed 6 years ago

tiborsimko commented 6 years ago

Prettify progress display for CWL workflows. Currently one gets:

$ reana-client workflow status -w workflow.2
NAME       RUN_NUMBER   CREATED               STATUS     PROGRESS   COMMAND

workflow 2 2018-06-28T08:57:32 finished 2/2 /bin/sh -c 'export
PATH="/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin";export
TMPDIR="/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/tmpdir/_A33Un";export
HOME="/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/docker_outdir";cp
-a
/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/outdir/w_pMyc/data.root
/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/docker_outdir/data.root
;cp -a
/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/inputs/fitdata.C
/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/docker_outdir/fitdata.C
;mkdir -p
/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/docker_outdir
&& cd
/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/docker_outdir
&& root -b -q
'"'"'fitdata.C("data.root","/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/docker_outdir/plot.png")'"'"';
cp -r
/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/docker_outdir/*
/data/00000000-0000-0000-0000-000000000000/analyses/291323df-feb5-44ce-a36b-7067e40f80ff/workspace/cwl/outdir/MDga4P'

(stemmed from https://github.com/reanahub/reana-workflow-engine-serial/pull/17#pullrequestreview-132753154)

dinosk commented 6 years ago

Closed in https://github.com/reanahub/reana-workflow-engine-cwl/pull/50