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reanahub / reana-client

REANA command-line client
http://reana-client.readthedocs.io/
MIT License
10 stars 45 forks source link

snakemake: load reana spec to send it to server #533

Closed mvidalgarcia closed 2 years ago

mvidalgarcia commented 3 years ago

closes #531

$ reana-client create -f reana-snakemake.yaml -w helloworld-snakemake
$ reana-client upload -w helloworld-snakemake
$ reana-client start -w helloworld-snakemake
$ reana-client logs -w helloworld-snakemake                       
==> Workflow engine logs
2021-07-22 09:16:27,199 | reana-workflow-engine-snakemake | MainThread | INFO | Snakemake workflows are not yet supported. Skipping...
2021-07-22 09:16:27,199 | reana-workflow-engine-snakemake | MainThread | INFO | Workflow spec received: workflow/snakemake/Snakefile
2021-07-22 09:16:27,211 | root | MainThread | INFO | Workflow 1d297776-64de-4ee9-8e32-78b34cbe45b4 finished. Files available at users/00000000-0000-0000-0000-000000000000/workflows/1d297776-64de-4ee9-8e32-78b34cbe45b4.
codecov-commenter commented 2 years ago

Codecov Report

Merging #533 (686a738) into master (575cf29) will decrease coverage by 0.04%. The diff coverage is 53.84%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #533      +/-   ##
==========================================
- Coverage   59.45%   59.41%   -0.05%     
==========================================
  Files          20       20              
  Lines        2306     2316      +10     
==========================================
+ Hits         1371     1376       +5     
- Misses        935      940       +5
Impacted Files Coverage Δ
reana_client/cli/workflow.py 62.92% <0.00%> (ø)
reana_client/validation/parameters.py 96.00% <42.85%> (-1.93%) :arrow_down:
reana_client/utils.py 71.18% <75.00%> (-0.08%) :arrow_down:
reana_client/config.py 100.00% <100.00%> (ø)