Snakemake by default runs its workflows using the local python environment. Since in the REANA platform the rules run as isolated Kubernetes Job, we always need to set a base container image.
Consider using the snakemake docker image if no environment/container is provided in the Snakefile.
Snakemake by default runs its workflows using the local python environment. Since in the REANA platform the rules run as isolated Kubernetes Job, we always need to set a base container image.
Consider using the
snakemakedocker image if no environment/containeris provided in the Snakefile.