New ebola practical - Githubissues

reconhub / learn

RECON learn: a free, open platform for training material on epidemics analysis

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New ebola practical #64

Closed zkamvar closed 5 years ago

zkamvar commented 5 years ago

This adds the adapted Ebola practical for the Colombia workshop by @zmcucunuba, @Imai-N, @annecori, and @finlaycampbell.

Things that still need to be done to ensure everything is cromulent:

[x] ensure that html widgets are properly presented ([narrator] they weren't)
[x] make sure header images are correct
[x] add note at the top of the practical informing users that this is an adaptation of an earlier practical.
[x] change installation of outbreaker2 once it is on CRAN
[x] use github version of projections (see https://github.com/reconhub/projections/issues/11)
[x] change full_version to FALSE
[x] link to practicals

zkamvar commented 5 years ago

Note to @annecori, @finlaycampbell, @Imai-N, and @zmcucunuba, you can preview the site by clicking on the "Details" part of the checks for this PR (or just click here: https://deploy-preview-64--reconlearn.netlify.com/)

Imai-N commented 5 years ago

amazing thanks @zkamvar !! just a note to say that we want the full_version = FALSE version publicly available.

The full_version = TRUE also renders the answers and correct code snippets. if you could put the FALSE version on RECONlearn for the delegates, then give us access to the TRUE version (so we have answers) that would be amazing.

zkamvar commented 5 years ago

amazing thanks @zkamvar !! just a note to say that we want the full_version = FALSE version publicly available.

The full_version = TRUE also renders the answers and correct code snippets. if you could put the FALSE version on RECONlearn for the delegates, then give us access to the TRUE version (so we have answers) that would be amazing.

ISWICD!

finlaycampbell commented 5 years ago

It looks like full_version = TRUE in part 3?

zkamvar commented 5 years ago

It looks like full_version = TRUE in part 3?

It was true for all of them, but I'm going to update them to parameterized reports so that the full versions aren't there.

zkamvar commented 5 years ago

I've created new figures like so:

library("magick")

eb <- image_read(here::here("static/img/highres/ebola-strikes-back.jpg"))
plot(eb)
set.seed(53)
h <- function() sample(0:200, 1)
plot(image_modulate(eb, h()/1.5, 100, h()))
image_write(image_modulate(eb, h()/1.25, 20, h()), 
            path = here::here("static/img/highres/ebola-strikes-back-2.jpg"))
image_write(image_modulate(eb, h()/1.5, 100, h()),
            path = here::here("static/img/highres/ebola-strikes-back-2.jpg"))

zkamvar commented 5 years ago

I have been informed that this is satisfactory and am merging now.