reconstrue / brightfield

Reconstruction of biocytin-stained neurons detected in brightfield microscopy image stacks
http://reconstrue.com
Apache License 2.0
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Generate training masks via existing segmenter code #204

Open JohnTigue opened 4 years ago

JohnTigue commented 4 years ago

Main goal is to traing CNN-ish models to segment images. But to get to a trained model, many techniques need training masks. Perhaps various existing non-CNN image segmenting techniques can be used to generate masks. Maybe make multiple masks in parallel and then see if they agree.

E.g. Random Walker segmentation in Python