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reconstrue / brightfield

Reconstruction of biocytin-stained neurons detected in brightfield microscopy image stacks
http://reconstrue.com
Apache License 2.0
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Viz: stack sampler, a few images equally spaces throughout the stack #33

Closed JohnTigue closed 4 years ago

JohnTigue commented 4 years ago

Work being done on Colab at: Sample the stack.

This will be a good way to demonstrate the nature of the brightfield microscope images. A way for those not familiar with the physics of microscopy to get an understanding of the effects of the data collection method on the data.

JohnTigue commented 4 years ago

Here's code how to pick indices spaced throughout the stack: https://stackoverflow.com/a/49204813