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reconstrue / single_cell

Single cell analysis tools built to run on Jupyter, especially Colab
http://reconstrue.com
Apache License 2.0
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UMAP preprocessing #16

Open JohnTigue opened 4 years ago

JohnTigue commented 4 years ago

Trapnell Lab: Dimensionality reduction by UMAP to visualize physical and genetic interactions

The top 100 principal components were then used as input to UMAP for generating 2D projections of the data. For subclustering, main clusters 1 – 10 were each individually processed using top 25 principal components in the subset data as input to UMAP dimensionality reduction and Louvain clustering.