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reconstrue / single_cell

Single cell analysis tools built to run on Jupyter, especially Colab
http://reconstrue.com
Apache License 2.0
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Start with reads #33

Open JohnTigue opened 4 years ago

JohnTigue commented 4 years ago

https://twitter.com/lpachter/status/1198730747059691520

@lioscro has extended it to be able to produce an analysis starting with reads. This means a Monocle 3 analysis can be produced for any dataset exclusively within @GoogleColab His example processes a dataset with >350 million reads. cc @coletrapnell

See Joseph Min on Twitter

JohnTigue commented 4 years ago

Kallisto bustools

  1. Load the count matrices into a notebook: See this python notebook for how to load the count matrices into ScanPy for analysis.
JohnTigue commented 4 years ago