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reconstrue / single_cell

Single cell analysis tools built to run on Jupyter, especially Colab
http://reconstrue.com
Apache License 2.0
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Google Sheets as raw data viewer #5

Open JohnTigue opened 4 years ago

JohnTigue commented 4 years ago

The name of this repo is transcriptomics_on_colab. Technically Google Sheets is not part of Colab, rather part of the broader Google platform. So let's use it. These scRNA-seq CSVs are very large in terms of rows and columns, so there will be some limit beyond which gSheets will not work, but let's see what it can do.

JohnTigue commented 4 years ago

But there's so many columns, too many for sheets. Is there some way of subsetting to < 256 columns.

JohnTigue commented 4 years ago

gSheets only allows 256 columns. Any value to selecting only 256 of 20K genes?

Maybe just feed it output of PCA.

gSheets can generate scatter plot. So, could just give gSheets the pre-rendered tSNE i.e. only a few columns per cell.