Patcher Lab: kallisto and bustools

[JohnTigue]

See #36

• Colab: basics.ipynb
• Modular and efficient pre-processing of single-cell RNA-seq (2019 pre-print)
  • 5 part blog series on the pre-print
• kallisto: https://pachterlab.github.io/kallisto/singlecell.html
• A Patcher blog post:

  • The memory efficiency of kallisto | bustools makes possible the simplest user interface imaginable: a kallisto | bustools based Google Colab notebook allows for single-cell RNA-seq pre-processing in the cloud on a web browser without a personal computer.

• https://www.kallistobus.tools/about
• The Barcode, UMI, Set format and BUStools Licenses:
• kallisto is BSD-2-Clause
• bustools is BSD-2-Clause

[JohnTigue]

https://www.kallistobus.tools/kb_getting_started.html