Open JafarAkhondali opened 4 years ago
Hi, when I was running:
if __name__ == "__main__": decomp = DimensionDecomp(df) decomp.umap_project()
It gave error:
--------------------------------------------------------------------------- TypeError Traceback (most recent call last) <ipython-input-19-b1fd8c784da4> in <module> 1 if __name__ == "__main__": 2 decomp = DimensionDecomp(df) ----> 3 decomp.umap_project() <ipython-input-15-b9b0a1fc250f> in umap_project(self) 61 62 # get umap res ---> 63 umap_res = self._umap_comp() 64 65 fig = px.scatter( <ipython-input-15-b9b0a1fc250f> in _umap_comp(self) 25 def _umap_comp(self): 26 umap = UMAP(n_components=2, random_state=42) ---> 27 umap_res = umap.fit_transform(self.input_cols) 28 umap_res = pd.DataFrame(umap_res, columns=["umap_x", "umap_y"]) 29 umap_res = pd.concat( /usr/local/lib/python3.8/site-packages/umap/umap_.py in fit_transform(self, X, y) 2010 Embedding of the training data in low-dimensional space. 2011 """ -> 2012 self.fit(X, y) 2013 return self.embedding_ 2014 /usr/local/lib/python3.8/site-packages/umap/umap_.py in fit(self, X, y) 1831 self._search_graph.data = _data 1832 self._search_graph = self._search_graph.maximum( -> 1833 self._search_graph.transpose() 1834 ).tocsr() 1835 /usr/local/lib/python3.8/site-packages/scipy/sparse/lil.py in transpose(self, axes, copy) 435 436 def transpose(self, axes=None, copy=False): --> 437 return self.tocsr(copy=copy).transpose(axes=axes, copy=False).tolil(copy=False) 438 439 transpose.__doc__ = spmatrix.transpose.__doc__ /usr/local/lib/python3.8/site-packages/scipy/sparse/lil.py in tocsr(self, copy) 460 indptr = np.empty(M + 1, dtype=idx_dtype) 461 indptr[0] = 0 --> 462 _csparsetools.lil_get_lengths(self.rows, indptr[1:]) 463 np.cumsum(indptr, out=indptr) 464 nnz = indptr[-1] _csparsetools.pyx in scipy.sparse._csparsetools.lil_get_lengths() /usr/local/lib/python3.8/site-packages/scipy/sparse/_csparsetools.cpython-38-x86_64-linux-gnu.so in View.MemoryView.memoryview_cwrapper() /usr/local/lib/python3.8/site-packages/scipy/sparse/_csparsetools.cpython-38-x86_64-linux-gnu.so in View.MemoryView.memoryview.__cinit__() TypeError: a bytes-like object is required, not 'list'
@JafarAkhondali Yes ...this is a known issue in the newer scipy versions. I've updated the dependencies. Should work as expected now. Let me know how it goes.
Hi, when I was running:
It gave error: