Marker gene highlighting and cluster filtering

[cytronicoder]

The current t-SNE plotting function allows a basic visualization of the data clustered with DBSCAN. However, it lacks the ability to highlight specific genes and filter clusters, which can be crucial for more targeted analysis.

Highlight Marker Gene(s)

• Add the ability to highlight one or more marker genes in the t-SNE plot.
• Users should be able to specify the color(s) for the marker gene(s) (e.g., red, blue, green, etc.).
• Marker genes should be prominent against the background genes, which should be displayed in a muted color (e.g., grey).

Display Specific Cluster(s)

• Allow users to specify one or more clusters to be displayed on the t-SNE plot.
• Other clusters should either be hidden or displayed in a muted color for context.

[cytronicoder]

2 fixes this issue for the most parts - I will need to add the ability to specify multiple marker genes to look at in a cluster (or multiple clusters to look at all together), and labelling them with different colors.

[cytronicoder]

Nope, contrary to what GitHub said - this is still very much open!