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reese3928 / methylGSA

A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing
https://bioconductor.org/packages/release/bioc/html/methylGSA.html
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Could not find function "getAnnot" #2

Closed BastiDucreux closed 3 years ago

BastiDucreux commented 3 years ago

Hi,

I'm currently trying to use the getAnnot function but it tells me the function is impossible to find :

library(methylGSA) a=getAnnot("EPIC") Error in getAnnot("EPIC") : could not find function "getAnnot"

packageVersion('methylGSA') [1] ‘1.8.0’

Would you know where the problem comes from ?

Thanks in advance.

Bastien

reese3928 commented 3 years ago

Hi,

This is because getAnnot() is an internal function and it is not exported. If this internal function has to be used. We can try:

library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19)
library(methylGSA)
a = methylGSA:::getAnnot("EPIC")

Xu