refgenie / plantref

Refgenieserver content repository for plant genomes server
http://plantref.databio.org
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structure ready to be populated #1

Closed nsheff closed 4 years ago

nsheff commented 4 years ago

@ieguinoa -- as discussed at BOSC, here's a new repo underlying a server for plant genomes.

I've put 2 fasta assets in and built these, which are now deployed here:

http://refgenomes.databio.org:84/

(assets from here: https://github.com/usegalaxy-be/reference-data/blob/master/refgenie/refgenie_conf.sh )do you want to see if you can figure out how to populate the PEP metadata that describes the assets you want to build? Then I will build them all and deploy to test.

we can change server and everything later but this is a good test.

nsheff commented 4 years ago

the only 2 files you should have to change are:

https://github.com/refgenie/plantref/blob/master/asset_pep/assets.csv

where you list each asset

and

https://github.com/refgenie/plantref/blob/master/asset_pep/recipe_inputs.csv

where you provide any inputs that are required to build the assets in the assets.csv list.

nsheff commented 4 years ago

See #2