Closed nsheff closed 3 years ago
In [30]: rgc.seek("bogus", "fasta") --------------------------------------------------------------------------- UndefinedAliasError Traceback (most recent call last) <ipython-input-30-e71101afb9a3> in <module> ----> 1 rgc.seek("bogus", "fasta") ~/.local/lib/python3.8/site-packages/refgenconf/refgenconf.py in seek(self, genome_name, asset_name, tag_name, seek_key, strict_exists, enclosing_dir, all_aliases, check_exist) 706 """ 707 tag_name = tag_name or self.get_default_tag(genome_name, asset_name) --> 708 genome_digest = self.get_genome_alias_digest(genome_name, fallback=True) 709 genome_ids = _make_list_of_str( 710 self.get_genome_alias(genome_digest, fallback=True, all_aliases=True) ~/.local/lib/python3.8/site-packages/refgenconf/refgenconf.py in get_genome_alias_digest(self, alias, fallback) 1619 """ 1620 try: -> 1621 return self[CFG_GENOMES_KEY].get_key(alias=alias) 1622 except (yacman.UndefinedAliasError, AttributeError): 1623 if not fallback: ~/.local/lib/python3.8/site-packages/yacman/alias.py in get_key(self, alias) 221 if alias in list(self[IK][ALIASES_KEY].keys()): 222 return self[IK][ALIASES_KEY][alias] --> 223 raise UndefinedAliasError("No key defined for: {}".format(alias)) 224 225 def set_aliases(self, key, aliases, overwrite=False, reset_key=False): UndefinedAliasError: No key defined for: bogus
I think it would be good to say something like "No genome found with alias 'bogus'." Instead of "No key defined for: bogus" .
As a user I don't really know what 'key' means in this context.
I think it would be good to say something like "No genome found with alias 'bogus'." Instead of "No key defined for: bogus" .
As a user I don't really know what 'key' means in this context.