Closed stolarczyk closed 3 years ago
refgenie seek t7/bowtie2_index
/home/nsheff/code/refgenie_sandbox/alias/t7/bowtie2_index/default/t7
I think you'd point to:
http://awspds.refgenie.databio.org/refgenomes.databio.org/t7/bowtie2_index/default/t7
so it wouldn't point to a file, if the seek key doesn't point to a file.
refgenie seekr
and refgenie seekr -s3
.Or, this could just be refgenie seek
if there's a config mode like mode: remote
? that turns all seeks
into remote URLs?
once we include unarchived assets on the server, we will be able to add
RefGenConf.seekr
method, which will point to a remote location of a file thatseek_key
points to. Two questions:seek_keys
that point to nonexistent files? Introduced in bowtie2_index recipe, e.g.hg38/bowtie2_index
S3Uri
? or all are an option and one of them is the default?http://refgenomes.databio.org/v3/...
http://awspds.refgenie.databio.org/refgenomes.databio.org/....
s3://awspds.refgenie.databio.org/refgenomes.databio.org/...