Closed stolarczyk closed 3 years ago
fixed:
[mstolarczyk@MichalsMBP code]: refgenie listr -s http://rg.databio.org -g hg38
Using default config. No config found in env var: ['REFGENIE']
Subscribed to: http://rg.databio.org
Setting 'hg38' identity with server: http://rg.databio.org/v3/genomes/genome_digest/hg38
Determined server digest for local genome alias (hg38): 2230c535660fb4774114bfa966a62f823fdb6d21acf138d4
Set genome alias (2230c535660fb4774114bfa966a62f823fdb6d21acf138d4: hg38)
Remote refgenie assets
Server URL: http://rg.databio.org
┏━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━┓
┃ genome ┃ asset (seek_keys) ┃ tags ┃
┡━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━┩
│ hg38 │ fasta (fasta, fai, chrom_sizes) │ default │
│ hg38 │ bowtie2_index (bowtie2_index) │ default │
└───────────┴────────────────────────────────────────────┴───────────┘
when using
refgenie listr
in remote mode (with no config initialized) the alias should be looked up on the server.current behavior:
Follow
refgenie seekr
, for example: