Closed nsheff closed 3 years ago
I couldn't find it in the docs -- given a genome and asset, can I get a list of seek keys?
Really, what I want is to do something like:
seek_keys = rgc.get_seek_path_dict("hg38")
and then refer to the paths, now in dict form, like:
seek_keys.fasta.chrom_sizes seek_keys.bowtie2_index.default
I can create something like this for default seek keys very easily like this:
ret = {} g = "t7" for a in rgc.list_assets_by_genome(g): ret[a] = rgc.seek(g, a, "default")
But I need this for all seek keys.
Just added a method that will help: https://github.com/refgenie/refgenconf/pull/129/commits/3c8945eecc04ad6e25ece75844f15b7951d195ca
awesome, that's all I needed!
I couldn't find it in the docs -- given a genome and asset, can I get a list of seek keys?
Really, what I want is to do something like:
and then refer to the paths, now in dict form, like:
I can create something like this for default seek keys very easily like this:
But I need this for all seek keys.