/usr/local/lib/python3.8/site-packages/refgenconf/refgenconf.py:773: RuntimeWarning: For genome 'rCRSd' path to the asset 'bowtie2_index/None:default' doesn't exist: /alias/rCRSd/bowtie2_index/default/rCRSd
warnings.warn(msg, RuntimeWarning)
This warning doesn't make sense and should be eliminated, since it's intended that this be a prefix and not a path.
As mentioned here:
https://github.com/databio/pepatac/issues/186
Seeking bowtie2 indexes yield a warning
This warning doesn't make sense and should be eliminated, since it's intended that this be a prefix and not a path.