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refgenie / refgenconf

A Python object for standardized reference genome assets.
http://refgenie.databio.org
BSD 2-Clause "Simplified" License
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empty dir produced after a negative answer to "large archive" question #62

Closed stolarczyk closed 5 years ago

stolarczyk commented 5 years ago

a negative answer to "do you want ... large archive?" question in refgenie pull G/A produces an empty G/A directory:

[mstolarczyk@MichalsMBP test_genomes]: refgenie pull -c genomes.yaml hg38_noalt_decoy/star_index
No digest not found for 'hg38_noalt_decoy/fasta:default'. Populating with server data
'hg38_noalt_decoy/star_index:default' archive size: 24.3GB
Are you sure you want to download this large archive? [y/N] N
pull action aborted by user
[mstolarczyk@MichalsMBP test_genomes]: refgenie pull -c genomes.yaml hg38_noalt_decoy/star_index
Replace existing (/Users/mstolarczyk/Desktop/testing/test_genomes/hg38_noalt_decoy/star_index/default)? [y/N] N
[mstolarczyk@MichalsMBP test_genomes]: ll /Users/mstolarczyk/Desktop/testing/test_genomes/hg38_noalt_decoy/star_index/default
total 0
drwxr-xr-x  2 mstolarczyk  staff    64B Sep 19 21:33 .
drwxr-xr-x  3 mstolarczyk  staff    96B Sep 19 21:33 ..