dsrc compress/uncompress... results in missing quality on 3rd read!

refresh-bio / DSRC

DSRC - DNA Sequence Reads Compressor

http://sun.aei.polsl.pl/dsrc/

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dsrc compress/uncompress... results in missing quality on 3rd read! #2

Closed earonesty closed 10 years ago

earonesty commented 10 years ago

dsrc c -test1.fq test1.dz && dsrc d -s test1.dz

----CUT----- @1 CLIP IS AGTCCCGTAC AT END ATATGCTACGTTTGTGACCTAGTCCCGTAC + hhhhhhhhhhhhhhhhhhhhhhhffgffaa @2 CLIP AGTCCCGTAC + AAAAs ATGTTCGTATATGAGCAGTCCCGTACAAAA + hhbhhhhhhhhhhhhhhhhhhhhfffffhh @3 CLIP JUST AGTCC TATAGCCTCTAGCTTGACTCTAGCTAGTCC + hhhhhhhhhhhhhhhhhhhhhhfffffhhh ----CUT-----

lrog commented 10 years ago

The bug involved invalid handling of non-uniform TAG fields. Fix was commited into tag-fix branch. I've launched basic tests on the specified files and they passed. I'll merge the fix with master after launching tests on more examples.

lrog commented 10 years ago

Fix merged into master.