refresh-bio / FAMSA

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
GNU General Public License v3.0
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Request Clustal format output #42

Open stubrown opened 1 year ago

stubrown commented 1 year ago

Please add an option to output results in Clustal (aln) format. This is the standard for most multiple alignment software, and is certainly more appropriate for users to inspect the alignment results. We would like to switch from Clustal to FAMSA for our website to take advantage of the speed for large alignments, but it is inefficient to require reformatting of results with another program in our workflow.

agudys commented 1 year ago

Hello! Sorry for the late response. We'll do our best to add this feature in the next FAMSA release.

Best, Adam