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refresh-bio / FAMSA

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
GNU General Public License v3.0
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Instructions for installation #6

Closed ekiefl closed 6 years ago

ekiefl commented 7 years ago

I am on mac 10.12.5. I cloned the repo and did make. The last two lines were

clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument]
make: *** No rule to make target `famsa-gpu', needed by `all'.  Stop.

The next thing I tried was the latest release. I downloaded the release file but I don't know what to do with it. Here's what I tried:

image

Please advise. Thanks!

agudys commented 7 years ago

Hi! Sorry for the late response - i'll take a look on that.

ppflrs commented 6 years ago

In case anyone encounters the same problem using the 1.2.1 OS X release, you need to change the permissions to make it executable.

  1. cd to the location where famsa-1.2.1-osx was downloaded
  2. Give execution permissions by: chmod +x famsa-1.2.1-osx
  3. Now you can execute famsa: ./famsa-1.2.1-osx
ekiefl commented 6 years ago

I found the same solution @ppflrs. I was able to get things to work with the following commands:

wget https://github.com/refresh-bio/FAMSA/releases/download/v1.2.1/famsa-1.2.1-osx -O famsa
chmod +x famsa
sudo mv famsa /usr/local/bin/famsa

taken from here

agudys commented 6 years ago

Thank you @ppflrs and @ekiefl for resolving the issue on your own. Sorry for the delay - I've been kind of busy recently. In case of other problems, do not hesitate to contact me - I'll respond faster.