Open jvolkening opened 5 years ago
I am getting errors on certain input files. An example is here: https://gist.github.com/jvolkening/0561163aeda8b884f9284eff4a66653a
When I compile latest master FaStore with debugging enabled and run
fastore_compress.sh --in test_1000_new.fq --out FOO --reduced --threads 2
I get
fastore_rebin: NodesPacker.cpp:1156: void IFastqNodesPackerDyn::UnpackFromBin(const BinaryBinBlock&, std::vector<FastqRecord>&, GraphEncodingContext&, FastqRecordBinStats&, IFastqChunkCollection&, bool): Assertion `dnaReader.Position() - initialDnaPos == (uint64)desc.dnaSize' failed. /home/jeremy/.local/bin/fastore_compress.sh: line 227: 11725 Aborted $FASTORE_REBIN e "-i$TMP_BIN" "-o$TMP_REBIN-2" "-t$TH_REBIN" $PAR_REBIN_C1 $PAR_PE -p2
I noticed that if I trim the reads to a given length and remove any remaining shorter reads (i.e. make all reads the same length) then compression succeeds. If I then remove a base/qual off the end of a random read, the errors return.
I am getting errors on certain input files. An example is here: https://gist.github.com/jvolkening/0561163aeda8b884f9284eff4a66653a
When I compile latest master FaStore with debugging enabled and run
I get
I noticed that if I trim the reads to a given length and remove any remaining shorter reads (i.e. make all reads the same length) then compression succeeds. If I then remove a base/qual off the end of a random read, the errors return.