refresh-bio / KMC

Fast and frugal disk based k-mer counter

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Enable Kmer counting at peptide level #144

Open ritah-nabunje opened 4 years ago

ritah-nabunje commented 4 years ago

I would like to compare kmers from two nucleotide sequence fasta files but at the amino acid level, whereby DNA sequence --> peptide sequence --> kmer comparison at aa level --> extract non-unique kmers. Could this be enabled?

notestaff commented 4 years ago

142 suggests a way to do this with a fairly small change to KMC.

Funny how two similar requests independently got posted on the same day.

@marekkokot