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Fast and frugal disk based k-mer counter
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Error: some error while reading fasta file, please contact authors (kmc_core/fastq_reader.cpp: 704) #213

Closed durrantmm closed 1 year ago

durrantmm commented 1 year ago

I am trying to use KMC v3.2.2 on a mac to get KMER counts in a FASTA file. I have used both the arm64 and x65 binaries. I get the same error whenever I run it:

>>> /Users/durrantmm/PycharmProjects/myproject/bin/mac/kmc/bin/kmc -k11 -m24 -fa test/BL21.fna k11.res tmp/
Stage 1: 100%
Error: some error while reading fasta file, please contact authors (kmc_core/fastq_reader.cpp: 704)

Any idea what is going on?

durrantmm commented 1 year ago

Nevermind, it worked when I changed -fa to -fm