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refresh-bio / KMC

Fast and frugal disk based k-mer counter
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test suite? #55

Open notestaff opened 6 years ago

notestaff commented 6 years ago

@marekkokot Is there a test suite you use to verify correctness of kmc and kmc_tools? If there is, could it be checked into github?

marekkokot commented 6 years ago

@notestaff Unfortunately, there is no such a test suite. Maybe someday we will prepare one, but for sure not in the near future.

notestaff commented 6 years ago

A python reimplementation of some of KMC's functions is at https://github.com/broadinstitute/viral-ngs/blob/is-add-kmc/test/unit/test_kmers.py#L96 . Maybe, could help in generating expected outputs for a KMC test suite?