I'm getting a "File load failed" warning during the "Processing queries..." step that causes the program to hang. The program rapidly gets through the first 3500 reference genomes, but then gets stuck at this point. I'm not sure which input genome is causing the issues (there are >200,000 of them).
When I kill the program, here's the following output:
File "PHIST/phist.py", line 107, in
subprocess.run(cmd)
File "/usr/lib64/python3.6/subprocess.py", line 425, in run
stdout, stderr = process.communicate(input, timeout=timeout)
File "/usr/lib64/python3.6/subprocess.py", line 855, in communicate
self.wait()
File "/usr/lib64/python3.6/subprocess.py", line 1477, in wait
(pid, sts) = self._try_wait(0)
File "/usr/lib64/python3.6/subprocess.py", line 1424, in _try_wait
(pid, sts) = os.waitpid(self.pid, wait_flags)
KeyboardInterrupt
I'm getting a "File load failed" warning during the "Processing queries..." step that causes the program to hang. The program rapidly gets through the first 3500 reference genomes, but then gets stuck at this point. I'm not sure which input genome is causing the issues (there are >200,000 of them).
When I kill the program, here's the following output: