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refresh-bio / PHIST

Phage-Host Interaction Search Tool
GNU General Public License v3.0
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File load failed #2

Closed snayfach closed 2 years ago

snayfach commented 2 years ago

I'm getting a "File load failed" warning during the "Processing queries..." step that causes the program to hang. The program rapidly gets through the first 3500 reference genomes, but then gets stuck at this point. I'm not sure which input genome is causing the issues (there are >200,000 of them).

When I kill the program, here's the following output:

File "PHIST/phist.py", line 107, in subprocess.run(cmd) File "/usr/lib64/python3.6/subprocess.py", line 425, in run stdout, stderr = process.communicate(input, timeout=timeout) File "/usr/lib64/python3.6/subprocess.py", line 855, in communicate self.wait() File "/usr/lib64/python3.6/subprocess.py", line 1477, in wait (pid, sts) = self._try_wait(0) File "/usr/lib64/python3.6/subprocess.py", line 1424, in _try_wait (pid, sts) = os.waitpid(self.pid, wait_flags) KeyboardInterrupt

snayfach commented 2 years ago

Duplicate with other ticket I opened