Is the run_10X pipeline available now?

refresh-bio / SPLASH

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Is the run_10X pipeline available now? #21

Open kaisermoon opened 9 months ago

kaisermoon commented 9 months ago

It's a remarkable job you're doing. I would like to be able to analyze my 10X scRNAseq data with SPLASH. Is the run_10X pipeline available now?

kaisermoon commented 9 months ago

@TavorB @marekkokot @agnieszkadanek @sebastiandeorowicz Looking forward to hearing from you

roozbehdn commented 9 months ago

Hello, Thank you for your interest in running SPLASH on 10x data. We will have a preprint on 10x application of SPLASH in the next few weeks.

kaisermoon commented 8 months ago

thank you so much!

mblanche commented 6 months ago

Hi, just brining this back to the top? Been digging into splash2 for the past week just to realized that 10X data were not compatible yet (despite a section describing 10x scRNA-Seq in the GitHub readme...).

Any ideas what is the ETA for this feature? Thanks