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refresh-bio / SPLASH

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OASIS test #27

Closed xuyeluo closed 1 month ago

xuyeluo commented 1 month ago

Hi, I read your paper OASIS: An interpretable, finite-sample valid alternative to Pearson’s X2 for scientific discovery and was very interested in the OASIS test. It seems to be more efficient than the Pearson's chi-squared test. However, I cannot install the SPLASH program and run it. Then I tried to find the source code of the OASIS test and ran the test with some contingency tables. But I did not find the OASIS test function. Is there a simple code for the OASIS test? For example, just input the contingency table and then output the results(p-value, statistics, Effect Size, f ,c)?

TavorB commented 1 month ago

Thanks for your interest! I added a standalone python file and sample jupyter notebook with OASIS functionality here: https://github.com/refresh-bio/SPLASH/tree/master/OASIS . I'm looking into making OASIS pip installable, please let me know if you have any questions / comments.

xuyeluo commented 1 month ago

Thank you!