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refresh-bio / agc

Assembled Genomes Compressor
MIT License
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Query Reference Sample Name #12

Closed lynnjo closed 5 months ago

lynnjo commented 8 months ago

Is there a way to query AGC for the sample name that was used as the reference? I can get all sample names with the "listset" command but I have a scenario where AGC is used in conjunction with other applications and I need to know what sample name was used as the reference when storing the compressed genomes.

sebastiandeorowicz commented 6 months ago

The feature will be added (also for older archives) in the forthcoming v.3.1. We need 1-2 weeks to complete.

lynnjo commented 6 months ago

Thank you !

sebastiandeorowicz commented 5 months ago

AGC 3.1 is ready. The update add new mode: listref. Python/C/C++ libraries also has new function giving the reference name.

lynnjo commented 5 months ago

Thank you very much for adding this functionality!

From: sebastiandeorowicz @.> Date: Monday, March 18, 2024 at 4:15 PM To: refresh-bio/agc @.> Cc: Lynn Carol Johnson @.>, Author @.> Subject: Re: [refresh-bio/agc] Query Reference Sample Name (Issue #12)

Closed #12https://github.com/refresh-bio/agc/issues/12 as completed.

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