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refresh-bio / agc

Assembled Genomes Compressor
MIT License
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libraduls source? #4

Closed Millak closed 7 months ago

Millak commented 1 year ago

Where does the raduls library come from? I didn't see it mentioned in the README or elsewhere in the repo so I was hoping you could point me where I can get the source for it.

sebastiandeorowicz commented 1 year ago

RADULS is our radix-sorter (https://github.com/refresh-bio/RADULS ). Nevertheless, in AGC we use its non-public variant (in-place radix sort). We plan to publish this variant in some time. Nevertheless, we have to work on it a bit.

aberthel commented 7 months ago

Have there been any updates to this? I would like to build AGC for M1/M2 Macs. In order to do that I need to recompile the libraries for this platform, and libraduls is the only one I haven't been able to compile from source.

sebastiandeorowicz commented 7 months ago

V.3.1, which should be ready in 1-2 weeks, will support M1/M2 CPUs as well as other ARM-based machines.

sebastiandeorowicz commented 7 months ago

AGC 3.1. is ready. Now we support M1/M2/...