We will add:
Output: The alignment will be printed to standard out and any progress or error messages will be printed to the standard error. This output can be redirected to files, e.g.:
virulign ref.xml sequence.fasta > alignment.mutations 2> alignment.err
We will add: Output: The alignment will be printed to standard out and any progress or error messages will be printed to the standard error. This output can be redirected to files, e.g.: virulign ref.xml sequence.fasta > alignment.mutations 2> alignment.err