update vignette - Githubissues

reichlab / covidHubUtils

Utility functions for the COVID-19 forecast hub

http://reichlab.io/covidHubUtils/

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update vignette #153

Closed elray1 closed 3 years ago

elray1 commented 3 years ago

[x] In the vignette examples of load_latest_forecasts, all the values of the argument forecast_date_window_size should be 6 instead of 7. We could add some text explaining why as well.
[x] Add example of plotting forecasts for hospitalizations
[x] vignettes currently do not build

ApurvShah007 commented 3 years ago

Update - Vignettes build now and the window size has been updated with a valid reason. I am still working on showing some examples for plotting forecasts for hospitalizations. @elray1 @nickreich @Serena-Wang

nickreich commented 3 years ago

some updates merged in #189.

A few other ideas for things to add to the vignette:

[x] some more details about the scoring calculations - maybe show the resulting table of scores in a datatable::DT()?
[ ] make a simple summary figure of scores along the lines of something shown in Estee's forecast scoring report?
[x] in the scoring section, add links to the evaluation paper, the evaluation reports page.
[x] add a browsable datatable::DT() to show a sample of forecasts and truth data in those respective sections.

ApurvShah007 commented 3 years ago

Added examples for hospitalization and incident deaths forecasts plots

Serena-Wang commented 3 years ago

To do:

[ ] add score plots using plotting functions in scoringutils