issues
search
reillytilbury
/
coppafish
Python version of iss software
MIT License
4
stars
2
forks
source link
OMP Optimisations and Refactor
#240
Closed
paulshuker
closed
4 months ago
paulshuker
commented
5 months ago
Loop through each tile, like what is done in alpha 0.10.4 at the moment.
Register every sequencing channel/round image to the anchor image that is the registration reference image, keep these images all in memory.
Run OMP computations on a "mini-tile" of shape
subset_size_yx x subset_size_yx x all_z_planes
. Repeat until the entire tile is run through on.
Remove numpy-only support for OMP. Only allow for Pytorch CPU and GPU support.
subset_size_yx x subset_size_yx x all_z_planes. Repeat until the entire tile is run through on.