Add improvements developed in 2018/2019 for v2019 release

reimandlab / ActiveDriverDB

ActiveDriverDB

GNU Lesser General Public License v2.1

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Add improvements developed in 2018/2019 for v2019 release #151

Closed krassowski closed 5 years ago

krassowski commented 5 years ago

This includes, but is not limited to:

more PTM sites (Uniprot)
conservation track
fully unit-tested import pipelines
PCAWG mutations support
more modular and sane modules structure
some analyses (which might be separated out as these not contribute to the ADDB, but build upon it)
updated dependencies, notably: Flask 1.0.2, SQLAlchemy 1.2.18, Celery 4.3

The test coverage will appear to decrease, but it is due to inclusion of the analysis code.

coveralls commented 5 years ago

Coverage decreased (-11.8%) to 70.851% when pulling 66f35a596057678093cbf7d8fba5f1b4af0a953f on v2019 into f9a7cee8f0c4eb03c2bb55f48f87a8b7017a56fd on master.