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Extract the Ensembl genes catalog to simple tables
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Ensembl Upgrade to Rat Assembly mRatBN7.2 Breaks Export #12

Closed ACastanza closed 2 years ago

ACastanza commented 2 years ago

Ensembl 105 updated the rat genome assembly from Rnor_6.0 to mRatBN7.2. This causes the export to fail: https://github.com/ACastanza/ensembl-genes/runs/4481560669?check_suite_focus=true

ACastanza commented 2 years ago

Resolved with https://github.com/related-sciences/ensembl-genes/pull/13

https://github.com/ACastanza/ensembl-genes/runs/4481921696?check_suite_focus=true

dhimmel commented 2 years ago

Thanks! So the new database is rattus_norvegicus_core_105_72.

dhimmel commented 2 years ago

Also noting the ensembl 105 release notes which include:

Rat (Rattus norvegicus) has been updated from Rnor 6.0 to mRatBN7.1

But perhaps mRatBN7.1 is a typo and should be mRatBN7.2?

dhimmel commented 2 years ago

Running an ensembl 105 export in https://github.com/related-sciences/ensembl-genes/actions/runs/1564168231

Results in https://github.com/related-sciences/ensembl-genes/tree/e7fc95777d13bb2f6a34d6922e4901810033d09d

ACastanza commented 2 years ago

RGD is also saying 7.2 (https://rgd.mcw.edu/wg/news/new-rat-genome/) so I assume it's just a typo in their release notes