Following #4, we now support human, mouse, and rat exports. However, in the species configuration for mouse and rat, we set enable_mhc=False because we haven't yet put in accurate coordinates for the major histocompatibility complex region and extended MHC in these species.
If anyone stumbles on this issue and can help that would be much appreciated! We will want coordinates in the assembly specified for each species: currently GRCm39 for mouse and Rnor_6.0 for rat.
Following #4, we now support human, mouse, and rat exports. However, in the species configuration for mouse and rat, we set
enable_mhc=Falsebecause we haven't yet put in accurate coordinates for the major histocompatibility complex region and extended MHC in these species.See the code that needs updating for mouse
https://github.com/related-sciences/ensembl-genes/blob/f7a0ba0ee97ebe6328815f5f2e804d89abe2a08e/ensembl_genes/species.py#L69-L76
And for rat
https://github.com/related-sciences/ensembl-genes/blob/f7a0ba0ee97ebe6328815f5f2e804d89abe2a08e/ensembl_genes/species.py#L86-L93
If anyone stumbles on this issue and can help that would be much appreciated! We will want coordinates in the assembly specified for each species: currently GRCm39 for mouse and Rnor_6.0 for rat.