Somewhat similar to hail.maximal_independent_set but with chromosome partitioned sequential algorithm for compatibility with PLINK/skallel results
My rationale for doing this instead is that users would be less skeptical if results were identical to other tools, rather than rolling a more scalable but less credible heuristic for this from the start
This issue tracks progress on method implementations with a focus on those mentioned in https://github.com/related-sciences/gwas-analysis/issues/16 (or things needed by these methods).
Progress: