Example command line for Nextera Paired-End data?

relipmoc / skewer

MIT License

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Example command line for Nextera Paired-End data? #16

Closed tseemann closed 9 years ago

tseemann commented 9 years ago

Could you please provide the command line for Nextera paired-end reads?
(Not mate pair)

relipmoc commented 9 years ago

$ skewer -x CGAGCCCACGAGACNNNNNNNNATCTCGTATGCCGTCTTCTGCTTG -y GACGCTGCCGACGANNNNNNNNGTGTAGATCTCGGTGGTCGCCGTATCATT -m any -t 10 raw_R1.fastq.gz raw_R2.fastq.gz -o data

tseemann commented 9 years ago

Thanks @relipmoc !