Open Isoobel opened 8 years ago
It seems that the input adapters file must end by a new line or the last adapter sequence will be truncated (the last nucleotide will be removed).
For example this adapters file: ">adapt1 CTCTCTCTCTCTCTA
adapt2 GTGTGTGTGTGTA"
When skewer is launched, it will use the following adapters: 'CTCTCTCTCTCTCTA' 'GTGTGTGTGTGT'
If a new line is added: ">adapt1 CTCTCTCTCTCTCTA
adapt2 GTGTGTGTGTGTA "
Skewer uses the correct adapters sequences: 'CTCTCTCTCTCTCTA' 'GTGTGTGTGTGTA'
It seems that the input adapters file must end by a new line or the last adapter sequence will be truncated (the last nucleotide will be removed).
For example this adapters file: ">adapt1 CTCTCTCTCTCTCTA
When skewer is launched, it will use the following adapters: 'CTCTCTCTCTCTCTA' 'GTGTGTGTGTGT'
If a new line is added: ">adapt1 CTCTCTCTCTCTCTA
Skewer uses the correct adapters sequences: 'CTCTCTCTCTCTCTA' 'GTGTGTGTGTGTA'