Closed royfrancis closed 6 years ago
Is it possible to set a different path for the output files other than the current working directory?
skewer \ -x "AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC" \ -y "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA" \ -m pe \ -u \ -n \ -k 6 \ -l 20 \ -o sampleA \ sampleA_1.fq.gz sampleA_2.fq.gz
Since the documentation says -o is a base name, -o, --output <str> Base name of output file; ('<reads>.trimmed')
-o
-o, --output <str> Base name of output file; ('<reads>.trimmed')
I was wondering if adding a path prefix would work? -o /home/custompath/sampleA
-o /home/custompath/sampleA
Of course. Standard rules of the command line apply, -o /path/to/directory/sampleA
Is it possible to set a different path for the output files other than the current working directory?
Since the documentation says
-o
is a base name,-o, --output <str> Base name of output file; ('<reads>.trimmed')
I was wondering if adding a path prefix would work?
-o /home/custompath/sampleA