The developer has clearly abandoned this software, but maybe the user community has an answer. The output from my run:
999156 read pairs processed; of these:
0 ( 0.00%) degenerative read pairs filtered out
0 ( 0.00%) short read pairs filtered out after trimming by size control
999156 (100.00%) empty read pairs filtered out after trimming by size control
0 ( 0.00%) read pairs available.
The developer has clearly abandoned this software, but maybe the user community has an answer. The output from my run:
What are "empty read pairs"?